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models [2017/07/27 09:02]
beudez
models [2020/07/13 12:18] (current)
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 ====== Capsis projects ====== ====== Capsis projects ======
  
-This page contains the list of active projects in the Capsis platform. You can find here about 60 forest growth or dynamics models (i.e. Capsis modules) and several applicative libraries.+This page contains the list of active projects in the Capsis platform. You can find here about 80 forest growth or dynamics models (i.e. Capsis modules) and several applicative libraries.
  
-Some of these components are distributed with an **open-source licence**, they are packaged in an archive ​you can download from the Download page. To get more details regarding a given project, please mail to the contact person.+Some of these components are distributed with an **open-source licence**, they are packaged in an installer ​you can download from the Download page. To get more details regarding a given project, please mail to the contact person.
  
-**Search the list:** //the most recent projects are at the top of the list. You can sort the table by clicking on the headers.//+**Search the list:** //the most recent projects are at the top of the list. //
  
 <​sortable> ​ <​sortable> ​
  
 ^ Project ^ Description ^ Contact, starting date ^ ^ Project ^ Description ^ Contact, starting date ^
-| **[[help_en:​Luberon2]]** | A distance-dependent tree model for Cedrus with genetics. It is a new version of the **Luberon** model in the context of the RMT-IGS project: "​Assessment of the genetic impacts of adaptation-oriented sylviculture practices"​.<​html><​br><​small>​Keywords : Genetics, Tree localisation model, Cedrus</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​francois.lefevre.2';​ ml += '​@';​ ml += '​inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ François Lefèvre </​a>'​)</​script>​ (INRA URFM)<​br>​ July 2017 </​html>​ |+| **[[help_en:​Poplar]]** | A generic bio-economic model for hybrid poplar plantations. The model was conceived to simulate the dynamics and to optimize the management of poplar plantations. <​html><​br><​small>​Keywords:​ GADA models, tree list, products yield </​small></​html>​ | <​html>​ <script type="​text/​javascript">​ml ='​mheshmat';​ ml += '​@';​ ml += '​ut.ac.ir';​ document.write('<​A href="​mailto:'​ + ml + '">​ Seyed Mahdi Heshmatol Vaezin</​a>'​)</​script>​ (University of Tehran, Iran) <br> July 2020 </​html>​ | 
 +| **[[help_en:​SurEau]]** | A plant hydraulic model that represents explicitly water flow between the soil, the plant and the atmosphere and the process of cavitation that leads to plant desiccation and mortality. <​html><​br><​small>​Keywords : plant hydraulics, drought, cavitation </​small></​html>​ | <​html>​ <script type="​text/​javascript">​ml ='​nicolas.martin';​ ml += '​@';​ ml += '​inrae.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Nicolas Martin</​a>'​)</​script>,​ Francois Pimont, Julien Ruffault (INRAE URFM, Avignon), <br> Hervé Cochard (INRAE Piaf, Clermont-Ferrand) <br> December 2019 </​html>​ | 
 +| **[[help_en:​Ibasam]]** | A metapopulation model to study salmon species population eco-evolutionary dynamics, accounting for river and marine ecosystems. This is the metapopulation version of the Ibasam software written by Cyril Piou and Etienne Prévost.<​html><​br><​small>​Keywords : fish, dynamics, genetics, climate </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​mathieu.buoro';​ ml += '​@';​ ml += '​inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Mathieu Buoro</​a>'​)</​script>,​ Jacques Labonne (INRA Ecobiop) <br> June 2019 </​html>​ | 
 +| **[[help_en:​EcoAF]]** | An Agroforestry model.<​html><​br><​small>​Keywords : Agroforestry,​ Genetics </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​frederique.santi';​ ml += '​@';​ ml += '​inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Frédérique Santi </​a>'​)</​script>,​ Tina Meziani (INRA BioforA), Christophe Sotteau (AGRO-ECO Expert) <br> May 2018 </​html>​ | 
 +| **[[help_en:​Luberon2]]** | A distance-dependent tree model for Cedrus with genetics. It is a new version of the **Luberon** model developed ​in the context of the RMT-IGS project: "​Assessment of the genetic impacts of adaptation-oriented sylviculture practices"​.<​html><​br><​small>​Keywords : Genetics, Tree localisation model, Cedrus</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​francois.lefevre.2';​ ml += '​@';​ ml += '​inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ François Lefèvre </​a>'​)</​script>​, Claire Godineau ​(INRA URFM)<​br>​ July 2017 </​html>​ | 
 +| **[[help_en:​Salem]]** | Salem is a StAnd LEvel Model for various species in pure or mixed stands. Salem is a combination of models based on NFI data for a good robustness and models based on tree cores to include climate effect. It allows to simulate stand growth according to IPCC climate projection.<​html><​br><​small>​Keywords : Growth model, Climate effect</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​irstea.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet </​a>'​)</​script>​ (IRSTEA Grenoble)<​br>​ June 2017 </​html>​ |
 | **[[help_en:​AlloStand3D]]** | A tree localisation algorithm from dbh inventories and crown allometries based on 3D crown overlap constraints <​html><​br><​small>​Keywords : Allometry, Tree localisation model, Voxelized tree</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​philippe.verley';​ ml += '​@';​ ml += '​ird.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Philippe Verley </​a>'​)</​script>,​ Nicolas Barbier, Pierre Ploton (IRD AMAP)<​br>​ November 2016 </​html>​ | | **[[help_en:​AlloStand3D]]** | A tree localisation algorithm from dbh inventories and crown allometries based on 3D crown overlap constraints <​html><​br><​small>​Keywords : Allometry, Tree localisation model, Voxelized tree</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​philippe.verley';​ ml += '​@';​ ml += '​ird.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Philippe Verley </​a>'​)</​script>,​ Nicolas Barbier, Pierre Ploton (IRD AMAP)<​br>​ November 2016 </​html>​ |
 | **[[help_en:​WallTree]]** | A generic tree growth model to be used to simulate the evolution of the Walloon forest (Southern part of Belgium) ​  <​html><​br><​small>​Keywords:​ Walloon Region, Belgium, Tree growth model </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​gligot';​ ml += '​@';​ ml += '​ulg.ac.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gauthier Ligot </​a>'​)</​script>​ (ULg, Gembloux Agro-Bio Tech, Belgique)<​br>​ Août 2016 </​html>​ | | **[[help_en:​WallTree]]** | A generic tree growth model to be used to simulate the evolution of the Walloon forest (Southern part of Belgium) ​  <​html><​br><​small>​Keywords:​ Walloon Region, Belgium, Tree growth model </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​gligot';​ ml += '​@';​ ml += '​ulg.ac.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gauthier Ligot </​a>'​)</​script>​ (ULg, Gembloux Agro-Bio Tech, Belgique)<​br>​ Août 2016 </​html>​ |
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 | **[[help_en:​FCBA Pseudotsuga menziesii]]** | A growth model for Douglas fir, based on the FCBA Oasis software. ​ <​html><​br><​small>​Keywords:​ Growth model, Pseudotsuga menziesii, Volume </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​priscilla.cailly';​ ml += '​@';​ ml += '​fcba.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Priscilla Cailly</​a>'​)</​script>,​ Sébastien Cavaignac (FCBA BSA, Bordeaux)<​br>​ November 2015 </​html>​ | | **[[help_en:​FCBA Pseudotsuga menziesii]]** | A growth model for Douglas fir, based on the FCBA Oasis software. ​ <​html><​br><​small>​Keywords:​ Growth model, Pseudotsuga menziesii, Volume </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​priscilla.cailly';​ ml += '​@';​ ml += '​fcba.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Priscilla Cailly</​a>'​)</​script>,​ Sébastien Cavaignac (FCBA BSA, Bordeaux)<​br>​ November 2015 </​html>​ |
 | **[[help_en:​silmars|SilmarS]]** | A growth model for Maritime pine developed jointly by FCBA and INRA in the context of the "​Groupe Pin Maritime du Futur" in the Aquitaine region. <​html><​br><​small>​Keywords:​ Maritime pine, Forestry growth model </​small></​html>​ |<​html><​script type="​text/​javascript">​ml ='​meredieu';​ ml += '​@';​ ml += '​pierroton.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Céline Meredieu</​a>'​)</​script>,​ Thierry Labbé (INRA Biogeco, Bordeaux), <script type="​text/​javascript">​ml ='​priscilla.cailly';​ ml += '​@';​ ml += '​fcba.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Priscilla Cailly</​a>'​)</​script>​ (FCBA, Bordeaux)<​br>​ October 2015</​html>​ | | **[[help_en:​silmars|SilmarS]]** | A growth model for Maritime pine developed jointly by FCBA and INRA in the context of the "​Groupe Pin Maritime du Futur" in the Aquitaine region. <​html><​br><​small>​Keywords:​ Maritime pine, Forestry growth model </​small></​html>​ |<​html><​script type="​text/​javascript">​ml ='​meredieu';​ ml += '​@';​ ml += '​pierroton.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Céline Meredieu</​a>'​)</​script>,​ Thierry Labbé (INRA Biogeco, Bordeaux), <script type="​text/​javascript">​ml ='​priscilla.cailly';​ ml += '​@';​ ml += '​fcba.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Priscilla Cailly</​a>'​)</​script>​ (FCBA, Bordeaux)<​br>​ October 2015</​html>​ |
-| **[[help_en:​plantabsl|PlantaBSL]]** | growth model for several species ​in the région Bas Saint Laurent in Québec. <​html><​br><​small>​Keywords: ​Forestry ​growth ​model </​small></​html>​ |<​html><​script type="​text/​javascript">​ml ='​Robert_Schneider';​ ml += '​@';​ ml += '​uqar.ca';​ document.write('<​A href="​mailto:'​ + ml + '">​ Robert Schneider</​a>'​)</​script>​ (UQAR, Québec)<​br>​ June 2015</​html>​ |+| **[[help_en:​plantabsl|CEP]]** | An individual tree growth model for white spruce plantations ​in Eastern Quebec. <​html><​br><​small>​Keywords: ​individual tree, growth ​and yield simulator, white spruce, plantation</​small></​html>​ |<​html><​script type="​text/​javascript">​ml ='​Robert_Schneider';​ ml += '​@';​ ml += '​uqar.ca';​ document.write('<​A href="​mailto:'​ + ml + '">​ Robert Schneider</​a>'​)</​script>​ (UQAR, Québec)<​br>​ June 2015</​html>​ |
 | **[[help_en:​samsaralightloader|SamsaraLight Loader]]** | SamsaraLight Loader is a module relying on samsaraLight library. No growth model is implemented. It loads detailed inventory files, computes the light intercepted by trees and the light transmitted to ground cells or virtual sensors. This model is particularly usefull to perform sensitivity analysis of SamsaraLight model and to analyze the effect of partial harvests on the distribution of light among the trees and regeneration. Functions are also available to compare light prediction versus light measures. <​html><​br><​small>​Keywords:​ Forestry model, Radiative balance </​small></​html>​ |<​html><​script type="​text/​javascript">​ml ='​gligot';​ ml += '​@';​ ml += '​ulg.ac.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gauthier Ligot</​a>'​)</​script>​ (Université de Liège Gembloux Agro-Bio Tech, Gembloux, Belgium) <br> April 2015<​br>​LGPL license </​html>​ | | **[[help_en:​samsaralightloader|SamsaraLight Loader]]** | SamsaraLight Loader is a module relying on samsaraLight library. No growth model is implemented. It loads detailed inventory files, computes the light intercepted by trees and the light transmitted to ground cells or virtual sensors. This model is particularly usefull to perform sensitivity analysis of SamsaraLight model and to analyze the effect of partial harvests on the distribution of light among the trees and regeneration. Functions are also available to compare light prediction versus light measures. <​html><​br><​small>​Keywords:​ Forestry model, Radiative balance </​small></​html>​ |<​html><​script type="​text/​javascript">​ml ='​gligot';​ ml += '​@';​ ml += '​ulg.ac.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gauthier Ligot</​a>'​)</​script>​ (Université de Liège Gembloux Agro-Bio Tech, Gembloux, Belgium) <br> April 2015<​br>​LGPL license </​html>​ |
 | **[[help_en:​Phenofit]]** | Phenofit (Chuine and Beaubien 2001) is a process-based model that predicts species distribution at the continental scale. Phenofit estimates the probability of presence of an adult tree over several years by its fitness on a given site. Fitness is defined as the product of the probability of survival and the probability of reproductive success at a yearly time step. Probabilities of presence predicted over several sites or over a grid produce the potential distribution of the tree species. <​html><​br><​small>​Keywords:​ Process-based model, Species distribution,​ Fitness</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​Isabelle.CHUINE';​ ml += '​@';​ ml += '​cefe.cnrs.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Isabelle Chuine</​a>'​)</​script>,​ Yassine Motie (CNRS CEFE, Montpellier) <br> January 2015</​html>​ | | **[[help_en:​Phenofit]]** | Phenofit (Chuine and Beaubien 2001) is a process-based model that predicts species distribution at the continental scale. Phenofit estimates the probability of presence of an adult tree over several years by its fitness on a given site. Fitness is defined as the product of the probability of survival and the probability of reproductive success at a yearly time step. Probabilities of presence predicted over several sites or over a grid produce the potential distribution of the tree species. <​html><​br><​small>​Keywords:​ Process-based model, Species distribution,​ Fitness</​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​Isabelle.CHUINE';​ ml += '​@';​ ml += '​cefe.cnrs.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Isabelle Chuine</​a>'​)</​script>,​ Yassine Motie (CNRS CEFE, Montpellier) <br> January 2015</​html>​ |
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 | **[[help_en:​Economics]]** | The Economics Module reads a dendrometry files and a cost/income file and creates an economic balance. ​ <​html><​br><​small>​Keywords:​ Economics, Picea abies, Pseudotsuga menziensii, Pinus pinaster, Volume, Crown volume </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​priscilla.cailly';​ ml += '​@';​ ml += '​fcba.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Priscilla Cailly</​a>'​)</​script>,​ (FCBA BSA, Bordeaux), Hanitra Rakotoarison (ONF R&D) <br> March 2014 </​html>​ | | **[[help_en:​Economics]]** | The Economics Module reads a dendrometry files and a cost/income file and creates an economic balance. ​ <​html><​br><​small>​Keywords:​ Economics, Picea abies, Pseudotsuga menziensii, Pinus pinaster, Volume, Crown volume </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​priscilla.cailly';​ ml += '​@';​ ml += '​fcba.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Priscilla Cailly</​a>'​)</​script>,​ (FCBA BSA, Bordeaux), Hanitra Rakotoarison (ONF R&D) <br> March 2014 </​html>​ |
 | **[[help_en:​Pinus pinaster]]** | A Distance-Independent Tree Model for Maritime Pine (Pinus Pinaster). An individual-based rewriting of PP3 (see below), a basis for integration of spatialized processes. ​ <​html><​br><​small>​Keywords:​ Pinus pinaster, Growth, Temperate, Stand level, Tree level, Pure, Regular </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​meredieu';​ ml += '​@';​ ml += '​pierroton.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Céline Meredieu</​a>'​)</​script>,​ Thierry Labbé (INRA BIOGECO, Bordeaux) <br> December 2013 </​html>​ | | **[[help_en:​Pinus pinaster]]** | A Distance-Independent Tree Model for Maritime Pine (Pinus Pinaster). An individual-based rewriting of PP3 (see below), a basis for integration of spatialized processes. ​ <​html><​br><​small>​Keywords:​ Pinus pinaster, Growth, Temperate, Stand level, Tree level, Pure, Regular </​small></​html> ​ |<​html>​ <script type="​text/​javascript">​ml ='​meredieu';​ ml += '​@';​ ml += '​pierroton.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Céline Meredieu</​a>'​)</​script>,​ Thierry Labbé (INRA BIOGECO, Bordeaux) <br> December 2013 </​html>​ |
-| **[[http://​capsis.cirad.fr/​capsis/​_media/​mathildeuserguidefr.pdf#section.1|Mathilde]]** | A distance-independent model for European beech and sessile oak under even-aged management. <​html><​br><​small>​Keywords:​ Quercus petraea, Fagus sylvatica, Mixed stands, Stochastic model, Single tree-based model</​small></​html>​ | <​html>​Rubén Manso (INRA, Nancy), <script type="​text/​javascript">​ml ='​Mathieu.Fortin';​ ml += '​@';​ ml += '​agroparistech.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Mathieu Fortin </​a>'​)</​script>​ (AgroParisTech,​ Nancy) <br> October 2013 </​html>​ |+| **[[http://​capsis.cirad.fr/​capsis/​_media/​mathildeuserguidefr20190501.pdf|Mathilde]]** | A distance-independent model for European beech and sessile oak under even-aged management. <​html><​br><​small>​Keywords:​ Quercus petraea, Fagus sylvatica, Mixed stands, Stochastic model, Single tree-based model</​small></​html>​ | <​html>​Rubén Manso (INRA, Nancy), <script type="​text/​javascript">​ml ='​Mathieu.Fortin';​ ml += '​@';​ ml += '​agroparistech.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Mathieu Fortin </​a>'​)</​script>​ (AgroParisTech,​ Nancy) <br> October 2013 </​html>​ |
 | **[[help_en:​Deesses]]** | Deesses, which stands for “DEux ESSEnceS” is a module that groups several 2 species models, developed with National Forest Inventory data. These models allow evaluating the mixture effect on basal area growth according to environmental variables. Deesses includes a previous model, Melies, developed for mixed Norway spruce – silver fir mixtures. It also contains equations sets for mixed Norway spruce – common beech and for mixed common beech – silver fir stands. |<​html>​ <script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​irstea.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet</​a>'​)</​script>,​ Maud Toigo, Thomas Pérot (Irstea Nogent sur Vernisson) <br> October 2013 </​html>​ | | **[[help_en:​Deesses]]** | Deesses, which stands for “DEux ESSEnceS” is a module that groups several 2 species models, developed with National Forest Inventory data. These models allow evaluating the mixture effect on basal area growth according to environmental variables. Deesses includes a previous model, Melies, developed for mixed Norway spruce – silver fir mixtures. It also contains equations sets for mixed Norway spruce – common beech and for mixed common beech – silver fir stands. |<​html>​ <script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​irstea.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet</​a>'​)</​script>,​ Maud Toigo, Thomas Pérot (Irstea Nogent sur Vernisson) <br> October 2013 </​html>​ |
 | **[[help_en:​Runaway]]** | This module investigates the evolution of correlation between traits under sexual selection in a theoretical population of organisms with a special attention on genome dynamics (number of loci, allelic diversity, mutation, drift, selection and linkage). It models a simple tradeoff between survival and energy devoted to reproduction,​ and a secondary tradeoff between gametic investment, phenotypic investment, and preference investment. These four traits are under genetic control, and energy devoted to reproduction limits the three other traits. The purpose is to explore the conditions for traits evolution and correlations and the evolution of their genomic structure. |<​html><​script type="​text/​javascript">​ml ='​labonne';​ ml += '​@';​ ml += '​st-pee.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Jacques Labonne</​a>'​)</​script>​ (UMR Ecobiop, Saint-Pée sur Nivelle) <br> September 2013 </​html>​ | | **[[help_en:​Runaway]]** | This module investigates the evolution of correlation between traits under sexual selection in a theoretical population of organisms with a special attention on genome dynamics (number of loci, allelic diversity, mutation, drift, selection and linkage). It models a simple tradeoff between survival and energy devoted to reproduction,​ and a secondary tradeoff between gametic investment, phenotypic investment, and preference investment. These four traits are under genetic control, and energy devoted to reproduction limits the three other traits. The purpose is to explore the conditions for traits evolution and correlations and the evolution of their genomic structure. |<​html><​script type="​text/​javascript">​ml ='​labonne';​ ml += '​@';​ ml += '​st-pee.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Jacques Labonne</​a>'​)</​script>​ (UMR Ecobiop, Saint-Pée sur Nivelle) <br> September 2013 </​html>​ |
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 | **[[help_en:​Mediterranea]]** | A fish model focused on the management of brown trout intraspecific biodiversity. The structure of this model is borrowed from the Bidasoa model, but it implements new relationships between genetic data and individuals traits or behaviour. Specifically,​ it aims at evaluating the role of difference in mating behaviour and juvenile survival difference between the Atlantic and Mediterranean lineages in brown trout in the dynamics of introgression. This module is destinated to fish population managers. |<​html><​script type="​text/​javascript">​ml ='​labonne';​ ml += '​@';​ ml += '​st-pee.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Jacques Labonne</​a>'​)</​script>​ (UMR Ecobiop, Saint-Pée sur Nivelle) <br> June 2012 </​html>​ | | **[[help_en:​Mediterranea]]** | A fish model focused on the management of brown trout intraspecific biodiversity. The structure of this model is borrowed from the Bidasoa model, but it implements new relationships between genetic data and individuals traits or behaviour. Specifically,​ it aims at evaluating the role of difference in mating behaviour and juvenile survival difference between the Atlantic and Mediterranean lineages in brown trout in the dynamics of introgression. This module is destinated to fish population managers. |<​html><​script type="​text/​javascript">​ml ='​labonne';​ ml += '​@';​ ml += '​st-pee.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Jacques Labonne</​a>'​)</​script>​ (UMR Ecobiop, Saint-Pée sur Nivelle) <br> June 2012 </​html>​ |
 | **[[help_en:​FTChene]]** | This module simulates the growth of coppice-with-standards oak stands. The model is fitted using NFI data of the half north of France. The “standards” part of the stand is tree-centered,​ while the coppice part is only one basal area for the stand. |<​html><​script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​irstea.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet</​a>'​)</​script>​ (IRSTEA, Nogent sur Vernisson), Thomas Bronner <br> April 2012 </​html>​ | | **[[help_en:​FTChene]]** | This module simulates the growth of coppice-with-standards oak stands. The model is fitted using NFI data of the half north of France. The “standards” part of the stand is tree-centered,​ while the coppice part is only one basal area for the stand. |<​html><​script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​irstea.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet</​a>'​)</​script>​ (IRSTEA, Nogent sur Vernisson), Thomas Bronner <br> April 2012 </​html>​ |
-| **[[help_en:​Woudyfor]]** | Woudyfor (WOody Understorey DYnamic in FORestry) predicts the population dynamics of a woody understorey shrub species (common gorse) within a forest stand of maritime pine and given forestry practices. This individual-based and spatially explicit model relies upon the different steps of the life cycle of the shrub species (germination,​ recruitment,​ growth, seed production, ageing and death). These steps are impacted by forestry practices (cleaning, thining, ploughing) and by the decrease of available light with pine tree growth. |<​html><​script type="​text/​javascript">​ml ='fdelerue'; ml += '​@';​ ml += '​bordeaux.inra.fr'; document.write('<​A href="​mailto:'​ + ml + '">​ Florian Delerue</​a>'​)</​script>​ (UMR BioGeCo, Université de Bordeaux) <br> March 2012 <br> January ​2014 (review) </​html>​ |+| **[[help_en:​Woudyfor]]** | Woudyfor (WOody Understorey DYnamic in FORestry) predicts the population dynamics of a woody understorey shrub species (common gorse) within a forest stand of maritime pine and given forestry practices. This individual-based and spatially explicit model relies upon the different steps of the life cycle of the shrub species (germination,​ recruitment,​ growth, seed production, ageing and death). These steps are impacted by forestry practices (cleaning, thining, ploughing) and by the decrease of available light with pine tree growth. |<​html><​script type="​text/​javascript">​ml ='florian.delerue'; ml += '​@';​ ml += '​bordeaux-inp.fr'; document.write('<​A href="​mailto:'​ + ml + '">​ Florian Delerue</​a>'​)</​script>​ (Bordeaux ​INP Georessources et Environnement / INRA ISPA) <br> March 2012 <br> January ​2020 (review) </​html>​ |
 | **[[help_en:​OptimiSt]]** | OptimiSt is a software to optimize stand-level multi-objective forest management and to simulate forest stand dynamics. OptimiSt is under permanent development since it is a flexible tool that can be adapted to different target forest species and ecosystems by enabling the integration of different forest management oriented models. |<​html><​script type="​text/​javascript">​ml ='​sergio.demiguel';​ ml += '​@';​ ml += '​uef.fi';​ document.write('<​A href="​mailto:'​ + ml + '">​ Sergio de Miguel</​a>'​)</​script>​ (University of Eastern Finland, Joensuu, Finland) <br> February 2012 </​html>​ | | **[[help_en:​OptimiSt]]** | OptimiSt is a software to optimize stand-level multi-objective forest management and to simulate forest stand dynamics. OptimiSt is under permanent development since it is a flexible tool that can be adapted to different target forest species and ecosystems by enabling the integration of different forest management oriented models. |<​html><​script type="​text/​javascript">​ml ='​sergio.demiguel';​ ml += '​@';​ ml += '​uef.fi';​ document.write('<​A href="​mailto:'​ + ml + '">​ Sergio de Miguel</​a>'​)</​script>​ (University of Eastern Finland, Joensuu, Finland) <br> February 2012 </​html>​ |
 | **[[help_en:​Quergus]]** | This project aims at analyzing the dynamic of uneven-aged acidophile medio-European beech forests. Such forest type represents a key habitat on an environmental aspect (Natura 2000 priority habitat), as well as on an economic and societal aspects. |<​html><​script type="​text/​javascript">​ml ='​gligot';​ ml += '​@';​ ml += '​ulg.ac.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gauthier Ligot</​a>'​)</​script>​ (Université de Liège Gembloux Agro-Bio Tech, Gembloux, Belgium) <br> February 2012 </​html>​ | | **[[help_en:​Quergus]]** | This project aims at analyzing the dynamic of uneven-aged acidophile medio-European beech forests. Such forest type represents a key habitat on an environmental aspect (Natura 2000 priority habitat), as well as on an economic and societal aspects. |<​html><​script type="​text/​javascript">​ml ='​gligot';​ ml += '​@';​ ml += '​ulg.ac.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gauthier Ligot</​a>'​)</​script>​ (Université de Liège Gembloux Agro-Bio Tech, Gembloux, Belgium) <br> February 2012 </​html>​ |
-| **[[help_en:​Heterofor]]** | Heterofor is a spatially-explicit and individual-based model under construction. The objective is to elaborate a model describing tree growth and resource use (solar radiation, water and nutrients) in heterogeneous forests (mixed and uneven-aged). | <​html><​script type="​text/​javascript">​ml ='​mathieu.jonard';​ ml += '​@';​ ml += '​uclouvain.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Mathieu Jonard</​a>'​)</​script>, ​Francois Herman ​(Université Catholique de Louvain, ELI-e, Louvain, Belgium) <br> January 2012</​html>​ | +| **[[help_en:​Heterofor]]** | Heterofor is a spatially-explicit and individual-based model under construction. The objective is to elaborate a model describing tree growth and resource use (solar radiation, water and nutrients) in heterogeneous forests (mixed and uneven-aged). | <​html><​script type="​text/​javascript">​ml ='​mathieu.jonard';​ ml += '​@';​ ml += '​uclouvain.be';​ document.write('<​A href="​mailto:'​ + ml + '">​ Mathieu Jonard</​a>'​)</​script>, ​Frédéric André, Louis de Wergifosse ​(Université Catholique de Louvain, ELI-e, Louvain, Belgium) <br> January 2012</​html>​ | 
-| **[[help_en:​twoe]]** | twoe (2e) is a software that can be used for modelling and simulating multispecies tropical forest dynamics from permanent plot data. | <​html><​script type="​text/​javascript">​ml ='​ghislain.vieilledent';​ ml += '​@';​ ml += '​cirad.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Ghislain Vieilledent</​a>'​)</​script>​ (Cirad-UR BSEF) <br> December 2011 <​br>​GPL license</​html>​ | +| **[[help_en:​twoe]]** | twoe (2e) is a software that can be used for modelling and simulating multispecies tropical forest dynamics from permanent plot data. | <​html><​script type="​text/​javascript">​ml ='​ghislain.vieilledent';​ ml += '​@';​ ml += '​cirad.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Ghislain Vieilledent</​a>'​)</​script>​ (Cirad-UMR AMAP) <br> December 2011 <​br>​GPL license</​html>​ | 
-| **[[help_en:​Simcop]]** | SimCoP is a french acronym for "​Simulateur de Croissance et de Développement de Conifères en Peuplement",​ wich translates to "​Growth and developement simulator of conifers in stand"​. It has been designed to enable evaluation of various silvicultural treatments on Douglas stands (Pseudotsuga menziesii (Mirb.) Franco). This simulator uses detailed information on individual tree growth, established through analysis of stems and branches, from a sample of felled trees. | <​html>​Jean-Marc Ottorini (INRA Lerfob), <script type="​text/​javascript">​ml ='thomas.bronner'; ml += '​@';​ ml += 'gmail.com'; document.write('<​A href="​mailto:'​ + ml + '"> ​Thomas Bronner</​a>'​)</​script>,​ Laurent Saint-André (INRA BEF) <br> August 2011 </​html>​ |+| **[[help_en:​SimCoP]]** | SimCoP is a french acronym for "​Simulateur de Croissance et de Développement de Conifères en Peuplement",​ wich translates to "​Growth and developement simulator of conifers in stand"​. It has been designed to enable evaluation of various silvicultural treatments on Douglas stands (Pseudotsuga menziesii (Mirb.) Franco). This simulator uses detailed information on individual tree growth, established through analysis of stems and branches, from a sample of felled trees. | <​html>​Jean-Marc Ottorini (INRA Lerfob), Francois Ningre (INRAE Silva), <script type="​text/​javascript">​ml ='holger.wernsdorfer'; ml += '​@';​ ml += 'agroparistech.fr'; document.write('<​A href="​mailto:'​ + ml + '"> ​Holger Wernsdorfer</​a>'​)</​script> ​(AgroParisTech Silva), Thomas Bronner, Laurent Saint-André (INRA BEF) <br> August 2011 </​html>​ |
 | **[[help_en:​Melies]]** | Melies is a stand basal area growth model for mixed Norway spruce - silver fir stands. It allows evaluating the mixture effect on basal area growth according to environmental variables. The first equations are described in the paper "​Silver fir stand productivity is enhanced when mixed with Norway spruce: evidence based on large-scale inventory data and a generic modelling approach",​ Vallet & Perot 2011, Journal of Vegetation Science (in press). | <​html><​script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​cemagref.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet</​a>'​)</​script>,​ Thomas Perot (Cemagref, Nogent sur Vernisson) <br> June 2011 </​html>​ | | **[[help_en:​Melies]]** | Melies is a stand basal area growth model for mixed Norway spruce - silver fir stands. It allows evaluating the mixture effect on basal area growth according to environmental variables. The first equations are described in the paper "​Silver fir stand productivity is enhanced when mixed with Norway spruce: evidence based on large-scale inventory data and a generic modelling approach",​ Vallet & Perot 2011, Journal of Vegetation Science (in press). | <​html><​script type="​text/​javascript">​ml ='​patrick.vallet';​ ml += '​@';​ ml += '​cemagref.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Patrick Vallet</​a>'​)</​script>,​ Thomas Perot (Cemagref, Nogent sur Vernisson) <br> June 2011 </​html>​ |
 | **[[help_en:​Natura]]** | Stand growth model for the province of Quebec, Canada. | <​html><​script type="​text/​javascript">​ml ='​isabelle.auger';​ ml += '​@';​ ml += '​mrnf.gouv.qc.ca';​ document.write('<​A href="​mailto:'​ + ml + '">​ Isabelle Auger</​a>'​)</​script>,​ Sadi Aid (MRNF, Québec) <br> May 2011 </​html>​ | | **[[help_en:​Natura]]** | Stand growth model for the province of Quebec, Canada. | <​html><​script type="​text/​javascript">​ml ='​isabelle.auger';​ ml += '​@';​ ml += '​mrnf.gouv.qc.ca';​ document.write('<​A href="​mailto:'​ + ml + '">​ Isabelle Auger</​a>'​)</​script>,​ Sadi Aid (MRNF, Québec) <br> May 2011 </​html>​ |
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 | ** [[help_en:​karite|Karite]] ** | Evolution of the genetic structure and diversity of a population of Karite | <​html><​script type='​text/​javascript'>​ml ='​pierre.dubus';​ ml += '​@';​ ml += '​cirad.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Pierre Dubus </​a>'​)</​script>​ (Cirad, Montpellier) <br> November 2006 </​html>​ | | ** [[help_en:​karite|Karite]] ** | Evolution of the genetic structure and diversity of a population of Karite | <​html><​script type='​text/​javascript'>​ml ='​pierre.dubus';​ ml += '​@';​ ml += '​cirad.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Pierre Dubus </​a>'​)</​script>​ (Cirad, Montpellier) <br> November 2006 </​html>​ |
 | ** [[help_en:​lemoine|Lemoine]] ** | A Stand Growth Model: a stand level model for Maritime pine in South-West France. Migrated from Capsis2. | <​html><​script type='​text/​javascript'>​ml ='​Celine.Meredieu';​ ml += '​@';​ ml += '​pierroton.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Céline Meredieu </​a>'​)</​script>,​ Thierry Labbé (INRA UMR BIOGECO, Bordeaux) <br> October 2006 </​html>​ | | ** [[help_en:​lemoine|Lemoine]] ** | A Stand Growth Model: a stand level model for Maritime pine in South-West France. Migrated from Capsis2. | <​html><​script type='​text/​javascript'>​ml ='​Celine.Meredieu';​ ml += '​@';​ ml += '​pierroton.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Céline Meredieu </​a>'​)</​script>,​ Thierry Labbé (INRA UMR BIOGECO, Bordeaux) <br> October 2006 </​html>​ |
-| ** [[help:​fireparadox|FuelManager]] ** | FuelManager:​ user friendly software that generates vegetation scenes in 3D to be used as input data for fire behaviour models. <​html><​br></​html>​- **Export to FIRETEC and WFDS** thanks to the [[http://​capsis.cirad.fr/​capsis/​help_en/​firelib|Fire]] library by Francois Pimont <​html><​br></​html>​- Publication of an article describing the software in Environmental Modelling and Software (March 2016 )| <​html><​script type='​text/​javascript'>​ml ='​eric.rigolot';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Eric Rigolot </​a>'​)</​script>​ (INRA URFM, Avignon) <br> September 2006+| ** [[help:​fireparadox|FuelManager]] ** | FuelManager:​ user friendly software that generates vegetation scenes in 3D to be used as input data for fire behaviour models. <​html><​br></​html>​- **Export to FIRETEC and WFDS** thanks to the [[http://​capsis.cirad.fr/​capsis/​help_en/​firelib|Fire]] library by Francois Pimont <​html><​br></​html>​- Publication of an article describing the software in Environmental Modelling and Software (March 2016). <​html><​br></​html>​ The FuelManager was formerly developed in the frame of the FireParadox European project.| <​html><​script type='​text/​javascript'>​ml ='​eric.rigolot';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Eric Rigolot </​a>'​)</​script>​ (INRA URFM, Avignon) <br> September 2006
 <br> <br>
 <script type='​text/​javascript'>​ml ='​pimont';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Francois Pimont </​a>'​)</​script>​ (INRA URFM, Avignon) <script type='​text/​javascript'>​ml ='​pimont';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Francois Pimont </​a>'​)</​script>​ (INRA URFM, Avignon)
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 | ** [[help_en:​ca1|CA1]] ** | A Distance-Independent Tree Model for Cedrus atlantica. | <​html><​script type='​text/​javascript'>​ml ='​courbet';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Francois Courbet </​a>'​)</​script>​ (INRA URFM, Avignon) <br> August 2002 </​html>​ | | ** [[help_en:​ca1|CA1]] ** | A Distance-Independent Tree Model for Cedrus atlantica. | <​html><​script type='​text/​javascript'>​ml ='​courbet';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Francois Courbet </​a>'​)</​script>​ (INRA URFM, Avignon) <br> August 2002 </​html>​ |
 | ** [[help_en:​hisafe|Hi-sAFe]] ** | A module for agroforestry,​ designed to model tree-tree and tree-crop competition in 3D. Includes competition for light, water and nitrogen at the day time-step, and some plasticity mechanisms including root plasticity in 3D (cellular automata). The crop is modeled with the STICS crop model (INRA CSE, Avignon) that is dynamically run from Hi-sAFe in java: connexion with a C version of STICS (Java Native Interface technology). {{:​couplage_hi-safe_stics.pdf|Poster}}. | <​html>​ <script type='​text/​javascript'>​ml ='​dupraz';​ ml += '​@';​ ml += '​supagro.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Christian Dupraz</​a>'​)</​script>,​ <script type='​text/​javascript'>​ml ='​lecomte';​ ml += '​@';​ ml += '​ensam.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Isabelle Lecomte</​a>'​)</​script>,​ Grégoire Talbot (INRA UMR SYSTEM, Montpellier) <br> July 2002 </​html>​ | | ** [[help_en:​hisafe|Hi-sAFe]] ** | A module for agroforestry,​ designed to model tree-tree and tree-crop competition in 3D. Includes competition for light, water and nitrogen at the day time-step, and some plasticity mechanisms including root plasticity in 3D (cellular automata). The crop is modeled with the STICS crop model (INRA CSE, Avignon) that is dynamically run from Hi-sAFe in java: connexion with a C version of STICS (Java Native Interface technology). {{:​couplage_hi-safe_stics.pdf|Poster}}. | <​html>​ <script type='​text/​javascript'>​ml ='​dupraz';​ ml += '​@';​ ml += '​supagro.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Christian Dupraz</​a>'​)</​script>,​ <script type='​text/​javascript'>​ml ='​lecomte';​ ml += '​@';​ ml += '​ensam.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Isabelle Lecomte</​a>'​)</​script>,​ Grégoire Talbot (INRA UMR SYSTEM, Montpellier) <br> July 2002 </​html>​ |
-| ** [[help_en:​genetics|Genetics]] ** | A library with Genetics tools for every modules. It contains ​descritions ​for genotypes and implementations for common genetics processes. | <​html><​script type='​text/​javascript'>​ml ='​pichot';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Christian Pichot </​a>'​)</​script>​ (INRA URFM, Avignon) <br> July 2002 </​html>​ |+| ** [[help_en:​genetics|Genetics]] ** | A library with Genetics tools for every modules. It contains ​descriptions ​for genotypes and implementations for common genetics processes. | <​html><​script type='​text/​javascript'>​ml ='​pichot';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Christian Pichot </​a>'​)</​script>​ (INRA URFM, Avignon) <br> July 2002 </​html>​ |
 | ** [[help_en:​fiestanrg|Fiesta / NRG]] ** | A Distance-Independent Tree Model for Pinus halepensis, with branches. | <​html><​script type='​text/​javascript'>​ml ='​dreyfus';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Philippe Dreyfus </​a>'​)</​script>​ (INRA URFM, Avignon) <br> April 2002 </​html>​ | | ** [[help_en:​fiestanrg|Fiesta / NRG]] ** | A Distance-Independent Tree Model for Pinus halepensis, with branches. | <​html><​script type='​text/​javascript'>​ml ='​dreyfus';​ ml += '​@';​ ml += '​avignon.inra.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Philippe Dreyfus </​a>'​)</​script>​ (INRA URFM, Avignon) <br> April 2002 </​html>​ |
 | ** [[help_en:​sexifs|Sexi-FS]] ** | A bridge module to the Sexi-FS simulator. Sexi-FS is a generic simulator for tropical forests dynamics studying. It was built in Bogor (Indonesia) by Grégoire Vincent (IRD) and Degi Harja Asmara (ICRAF).| <​html><​script type='​text/​javascript'>​ml ='​gregoire.vincent';​ ml += '​@';​ ml += '​cirad.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gregoire Vincent </​a>'​)</​script>​ (IRD UMR AMAP, Montpellier) <br> March 2002 </​html>​ | | ** [[help_en:​sexifs|Sexi-FS]] ** | A bridge module to the Sexi-FS simulator. Sexi-FS is a generic simulator for tropical forests dynamics studying. It was built in Bogor (Indonesia) by Grégoire Vincent (IRD) and Degi Harja Asmara (ICRAF).| <​html><​script type='​text/​javascript'>​ml ='​gregoire.vincent';​ ml += '​@';​ ml += '​cirad.fr';​ document.write('<​A href="​mailto:'​ + ml + '">​ Gregoire Vincent </​a>'​)</​script>​ (IRD UMR AMAP, Montpellier) <br> March 2002 </​html>​ |
models.1501146157.txt · Last modified: 2017/07/27 09:02 by beudez